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Genus concepts
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Topic: Genus concepts in lichenology, proposed
by P.L. Nimis
The present tendencies concerning the genus
concept in lichenology somehow recall the Italian-Slesian revolution
of 150 years ago, based on the use of microscopical characters.
At that time, however, it did not end well: the hasty creation
of hundreds of names was threatening nomenclatural chaos, and
this just when new lichens brought back from the colonies awaited
to be rapidly filed into clear-cut generic containers by the few
lichenologists of the newly created National Museums. The harsh
reaction started by Nylander culminated with the pinnacle of Zahlbruckner's
Catalogus, where extremely unnatural generic concepts were
often adopted. This was indeed a real monument, but also a heavy
sarcophagus for fresh, sound, evolutionary ideas. The sarcophagus
was so imposing that it conspired to hold back the recognition
of monophyletic units amongst lichen-forming fungi for over a
century. Timid approaches to resurrect a few more natural genera
appeared only a few decades ago, first mainly at the expense of
some of the larger crustose mega-genera, then also of some macrolichen
genera. It was like a small rivulet of new genera, growing to
a larger and somehow solemn river: Lichenology was waking up from
an all too long sleep. Then, suddenly, came the flood, announced
by a first wave: the splitting of Parmelia. No doubt, these
studies brought about an immense increase in the knowledge of
this group. However, several lichenologists felt, and still feel,
that most of the new generic segregations were not justified,
and that once this trend received more widespread acceptance,
it would have resulted in serious problems for lichen taxonomy.
This as an introduction. Here are some points for discussion:
1) Some recent generic splittings are often justified on practical
grounds: the old genera were "too large". My objection
is that, when both large and small genera do exist, this fact
should be accepted and recognized nomenclaturally ("If
God created large genera, why should men go against God's will?").
Otherwise, examples of "practical" splitting of large
genera will be automatically extended to small genera as well,
as is happening today, and this is much more difficult to justify
on "practical" grounds. 2) "God created only
the species, and not the genera", somebody objected during
a dinner in Salzburg. I maintain that the Creation has an inner
structure, which means that God created also the genera (please,
have a look to any cladogram if you do not believe this). Hence,
we cannot do just what we want with generic concepts, and if we
split large genera just because they are large...the Inferno is
waiting for us. 3) More and more lichenologists tend to assume
that every supposedly monophyletic group of species deserves to
be treated at the rank of genus. As there is no "lower limit"
to the definition of the term "monophyletic" this assumption
could lead to the recognition of every single species as a genus,
which is obviously an absurdity. Where should we stop splitting?
4) Taxonomy has two faces: one for specialists, the other for
users - and users are many more than specialists can see from
their ivory towers. Generic names are an integral part of the
binomial, and any generic change has heavy repercussions on nomenclatural
stability. This does not apply to subgeneric-supraspecific ranks.
When the taxonomy of a given group is far from being settled,
and if there is no clear evidence that a supposedly monophyletic
group of species has nothing to do with its older genus, the tentative
segregation should be done at subgeneric rank. The new taxonomic
information will be there, without causing unnecessary, and often
provisional, nomenclatural changes. Names are too important and
delicate a matter: we cannot play with names. 5) Do we agree that
lichens are fungi? More attention should be paid to generic concepts
outside the narrow field of lichenology. Current trends risk isolating
lichenology from Mycology again.
I myself had the following nightmare last year:
"Let's take a large lichen family, with two small macrolichen
genera and a huge genus of crustose lichens (Teloschistaceae).
I can start from the small genera, segregating one species here,
two species there, because of small anatomical differences. Why
not? It has been already done elsewhere. Now the problem arises:
what will this mean for Caloplaca? Well, some more or less
clearly-defined groups are there, attracting, like mermaids, suitable
candidates for new genera. No doubt, the new segregations could
work, at least for a while, because a huge container is left for
all the rest. Let's do it...". After waking up, I realized
that, before doing it, one should first explore the whole container,
since several surprising things could be left there. If I hastily
try to slice from Caloplaca some juicy beef-steak genera,
I'll be likely to create the premises for a nice hamburger. Then
we'll have to deal with a nomenclatural hamburger. Gaining what
in terms of new knowledge? Not a jot. Fast-food taxonomy? No thanks.
Many lichen genera are still artificial, and
deserve careful segregation. Within larger units, such as Caloplaca,
or the Verrucariaceae, we still have to tentatively define smaller
groups of closely related species: is it really necessary to crown
the recognition of every small supposedly monophyletic segregate
with a new generic name? Should the motto of modern lichen taxonomy
be: "If I don't do it, somebody else will do it"?
Should not what happened one hundred years ago be a lesson for
all of us? The whole matter is complex and controversial, it urgently
needs discussion, and nobody can claim to have the right answer.
In Salzburg several new generic segregations smoothly melted away
before a more or less silent audience. In this, at least, history
does not repeat itself: how far was that all too quiet pond from
the stormy discussions about generic concepts of 150 years ago!
But this, I am afraid, is not exactly a sign that the old sentence
is true: "Historia magistra vitae".
Pier Luigi Nimis, Trieste
Reactions
The whole discussion on a "common generic
concept" is stimulating but somewhat futile because there
are no means to agree upon such a concept. First of all, genera
or higher taxa do not evolve. They are human abstractions and
not units of evolution. Only species evolve, or some other unit
such as populations that can be conceived as existing entities
of nature. Secondly, phylogenetic systematics is science, and
any practical purposes of systematics such as nomenclature are
subordinate to science. To be scientific, observations must be
repeatable and hypotheses must be falsifiable. In working with
phylogenetic systematics there are some basic assumptions that
we must accept: 1. Organisms form patterns of groups that can
be hierarchically arranged. 2. This hierarchy can be discovered
by grouping the organisms on shared, derived characters through
character state changes. 3. Ad hoc hypotheses of homoplasy are
minimized by using the parsimony criterion. The diagrams, the
phylogenetic trees, produced under those assumptions represent
the hierarchy. The branching points, if being used as taxonomic
groups, must include all members of the group otherwise groups
will not be monophyletic. Therefore a suggested classification
must be in accordance with the phylogeny. That includes the monophyletic
groups we choose to call genera. There is no way round this. However,
the size of a genus, how many species it should include, is a
(subjective) decision that the individual taxonomist has to take.
Anders Tehler, Stockholm
I agree with Pier Luigi's introduction to the
Forum discussion. Two main points should be addressed:
1. The grouping of taxa, and, 2. The ranking of taxa. - 1. The
grouping: We all agree that the groups we wish to segregate should
be monophyletic, i.e. they must include an ancestral species (known
or hypothesized) and all of its descendants (Wiley 1981). This
is not an easy concept to test for. When sexually reproductive
characters (supposedly highly conserved) like ascus structure
are used as synapomorphies, then the segregates encounter wide
acceptance among us (see the splitting of Lecidea s. Zahlbr.).
When vegetative characters (supposed to be much more open to convergence
and parallelism) are used, then the segregated groups are highly
controversial, as in the famous splitting of Parmelia.
So, should we say that sexual characters should always prevail
against vegetative characters? The use of sexual characters is
not without problems. Just look at the present segregation trends
in cetrarioid genera, where small variations in ascus structure,
spore and ascus shapes are used to distinguish small entities.
Where are the limits? My point is that we have powerful tools
for testing monophyly, those of molecular biology, by sequencing
ribosome, and hopefully very soon other genes. I can anticipate
that the first (still unpublished) results on the sequencing of
the 25S rDNA do not confirm the monophyly of most of the genera
segregated from Parmelia s. lat. A possibility would be
to require that every new segregation of large groups should be
tested for monophyly with molecular methods. 2. The ranking: What
should we do with groups which proved to be monophyletic? Pier
Luigi is right when he writes "there is no lower limit
to the definition of the term monophyletic". Here there
will always be a large element of subjectivity, even when molecular
methods are used. What we need is: a) sound jugement and wide
experience, b) patience: "we should first explore the
whole container" before making a sound taxonomic judgement,
which often needs more collaboration and less competition, c)
withdrawal of the ego (maybe one of the most important problems).
Nomenclatural stability should be a high priority, since we cannot
go on playing with names without a severe loss of credibility.
The problem is that, in taxonomy, both name and author's recognition
are connected by nomenclature! I see no other reasons why lichen
taxonomists do not like to work at infrageneric levels. One among
the possible solutions would be to cite only the basionym, as
it is done in Zoology. Nowadays, anybody can validly publish anything,
especially in journals that are not reviewed. Publication of new
species or new genera should be allowed only in choosed specific
journals, as it is the case, I believe, in bacteriology? In any
case, editors and reviewers of journals, symposium proceedings
etc., as well as the whole lichenological community, should take
their responsability when faced to fast-food taxonomy.
There is still a long way to go, but the fact that we recognize
the problems and that we talk about them is already a good sign.
If we want our science to be accepted as basic and modern research
we should find new ways of dealing with this important topic.
I propose that the IAL could constitute a group, working out propositions,
and submitting them to the lichenological community.
Philippe Clerc, Geneva
I liked Nimis' careful presentation of arguments
very much. There is not one "good" generic division,
but many phylogenetically correct systems are possible and equally
acceptable. It is easy to make "good" new genera by
just uniting existing ones. Splitting is more tricky, but becomes
easier when the segregates are made small enough. Thus, one may
say that there is no scientific progress in making a new genus
itself. It is only the new arguments leading to this step, which
mean scientific progress. If one discovers a good argument to
divide a genus into two sister groups, the scientific gain remains
the same whether the new groups are treated as subgenera or as
genera. The only difference is that in the second case other people
are upset, as they have to adapt to new names. Another point concerns
the strength of the evidence. If only one character is involved,
this is the weakest possible evidence. It could be easily in conflict
with the next character to be discovered. Consequently, two questions
should be answered when a new genus is to be made: 1. Is there
more than one character separating it from its closest relatives,
or could any additional character provide an easy argumentation
to make the division futile? (If so, users would be happy to keep
the current generic arrangement); 2. What are the closest relatives
of the new entities? Are they more closely related to each other
than to other groups? (If so, treating them as subgenera would
not require name changes).
Harrie Sipman, Berlin
The discussion started by Pier Luigi includes
widely different scientific problems, as well as covering fields
of psychology, sociology, and even subjective believes. Here,
I will just touch some points which are mainly connected to our
personalities. The naming of things is such an important issue
that mankind has been aware of this since the oldest times (Genesis,
2: 19-20, cf. Gen. 1:29-30). Everything has to have a name in
order to be or not to be. Naming gives power over the named, and
success in the spreading of "our" names gives us some
power even on other persons who have to use them. This is why
the naming of taxa, events or laws etc. is so important for most
people, and not only the fact that authors' names are connected
to the taxonomic binomial. Does the zoological system result in
fewer new combinations, less splitting and larger monophyletic
groups? Yes, some ranks are nomenclaturally more important than
others. If I accept or propose a subgenus or a variety this normally
does not affect any writer of floras, checklists or general systematic
overviews, any curator of herbaria, any teacher etc., but if I
describe a new genus, or raise a variety to the species level,
our impact on lichenologists is tremendous. The idea of names
in current use, and the change of the code in the matter of conservation
of names maybe can help us to avoid this, but this has not been
the case so far. On the other hand, would we be prepared to let
others decide whether our decisions are correct or not? Usually
we know the group best, are there any better judges? If we can't
agree on some existing persons' taxonomic superiority over the
rest of us, it is useless to try to find formalised juries. Systema
Ascomycetum or the meeting in Paris some years ago, when we
tried to get consensus on the systematics of some lichen groups,
can serve as good examples of rejected activities. I think we
have to find other ways for a solution.
Jan Eric Mattsson, Lund
I do not agree with most of Nimis' points,
for these main reasons: 1) When Nimis argues that lichens are
fungi as all other fungi, he implicitly assumes that only - or
mostly - sexual characters should be used to separate genera.
If this criterion is adopted strictly, it could result in Xanthoria,
Caloplaca and Teloschistes being re-united under
the same genus. Are we really ready to accept this conclusion
? If not, then the question arises: do lichens have something
"special" with respect to other fungi ? 2) "God"
did not create genera, genera are names, and names are made, and
used, by men. We use names for our practical purposes: uncultured
people have a poor vocabulary, cultured people a rich one. The
more names we have, the richer our world becomes. Why should lichenologists
force themselves to use a poor language? 3) As genera do not exist
as such, and as our vocabulary should fit our practical needs,
Nimis should explain what is the practical advantage in having
a dictionary where some hundreds widely different objects are
given the same name, just because they share a few characters
considered to be as "more important", such as ascus
and spore types. I heard so many generic lumpers in Australia
saying: "look, there's a strange Xanthoparmelia"!
People around understood much more about the thing than if he
had just said "Parmelia". 4) Nomenclatural stability
is certainly important. But, fortunately, we no longer call all
our beloved, strange beings Lichen. Modern Germans have
problems in reading the Nibelungenlied, as many Greeks
have problems in reading Homer. Let languages evolve, and among
them our language, that of taxonomy !
Louis Le Bois, Venice
Response to Louis Le Bois's remark no.1: I
agree that fungi are also (non-lichenized) lichens, but do not
think that this implies that only sexual characters are to be
used for generic delimitation. In large groups of non-lichenized
lichens they are used not only for genus, but also for species
delimitation, because there is little else one could use, while
the mycelium does not seem to provide many useful characters.
In Hyphomycetes many genera are installed without any use
of sexual characters. Taxonomy should use any characters that
can be properly defined, and objectivity requires that this should
be done without a priori weighting. Thus, when lichenized
lichens show a wealth of thallus characters, we should use them
as best we can. The natural classification of lichens should reflect
a phylogenetical process, and is principally different from a
classification of physical objects, where a periodical system
with few fixed criteria can be very useful. To me, it seems impractical
to consistently use comparable criteria for similar ranks, not
even in related groups. In Parmeliaceae this would lead
to a single genus Parmelia with perhaps 1000 species next
to dozens of genera for the 100 species until recently included
in Cetraria. It reminds me of putting all insects in a
single genus next to Limulus or some other genera of primitive
crustaceans. I suggest maintaining supposedly primitive genera,
where "basic" characters are variable, like Cetraria
s.l. and Omphalodium s.l.
Harrie Sipman, Berlin
Comment to Le Bois' second point - All taxa
in one sense are names, but there exists also that reality to
which we try to point with these names. Who would claim that that
the group of pines (Pinus) with all its diverse species
is nothing more than a name? Nature just is highly organized;
that's one of the things about it that fascinates us, and it would
be unreasonable to expect it to contain species not in related
groups. Genera have an obvious reality apart from being mere names.
D. Wright, Fieldbrook, CA
Wright's response to Le Bois exacty reflects
what I meant with the sentence "If God created large genera,...etc."
and with "The Creation has an inner structure".
If genera are not mere names, but a reality, then we can expect
that there will be something like large and small genera (e.g.
Pinus, Taxus), and our names should fit this reality.
Your point makes the deepest core of the whole matter very clear:
the splitting of genera just because they are large implies the
non-recognition of "genera" as a reality.
Pier Luigi Nimis, Trieste
I disagree, as usual, with Nimis. The point
raised by Wright affects any taxonomic rank, not only genera.
Yes, we have to deal with a hierarchically structured reality,
and this hierarchy is the product of evolution-phylogeny. However,
once the structure is covered by a taxonomic hierarchy, the treatment
of different taxonomic entities as "genus", "subgenus",
"family" etc., is just a matter of naming, and here
practical considerations are more than justified, as in the natural
evolution of languages. We would not be able to speak about the
world if this were not be structured. Our language should cover
these structures as a thin, transparent layer. The world is complex,
however, and these structures cannot be compressed into a rigid
scheme formed by a few hierachically arranged units, those of
the same rank so to speak at the same "level". Genera
do not exist as such, what exists is the taxonomic structure,
and we can use generic names to describe it without worrying about
the "existence" of something called "genus".
Louis Le Bois, Venice
Comment on the suggestion that taxonomic analyses
should be based on a priori equally weighted characters. - A selection
of characters is always made, consciously or unconsciously, because
it is impossible to include every character (e.g. "the square
root of spore width divided by the depth of the fissures separating
areoles"). Any correlation of presumably independent characters
is important. Selection of characters and unequal weightings should
be made with the greatest care. It is easy to implicitly use a
priori judgements of the taxonomy within the studied group
when choosing characters, and this must always be avoided.
Lars Fröberg, Lund
Individuals are discrete entities, but their
resemblances fall into such a pattern that our mind can assemble
them into hierachically arranged groups, such that all entities
within one group are more "like" one another than those
in other groups. Though the genus is a human concept, it corresponds
with something real if similarity discontinuities support its
recognition. Otherwise, this would become purely arbitrary. It
is my contention that such discontinuities do exist, and that
it is the business of systematists to find them. However, the
question will still arise as to the hierarchical level of the
grouping thus recognized. To answer this question, reference should
be made to the degree of dissimilarity - of discontinuity - between
this and other groupings. To do this, we need suitable means of
measuring similarity between taxa. I have proposed such a measure
based on probability. A set of attributes is selected such that
no logical or ontogenetic correlation between them seems likely
(see the contribution from Fröberg). For each attribute,
all possible pairs of alternative values are placed in order of
similarity, and for each such pair of values the cumulative probability
of that or any more similar pair within the reference population
of taxa is assessed. This having been done for all the attributes,
then for any given pair of taxa the probabilities are combined
over the whole range of attributes, on the assumption that the
attributes are uncorrelated. The lower the resulting probability,
the more similar are the taxa compared. See an example in Goodall
& Marchant (1996, Abstr. Bot. 20, 1: 1-15). It might well
be possible to apply this approach to the recognition and separation
of genera among lichens.
David W. Goodall, Canberra
One of the main problems of modern generic
splittings is that most authors are satisfied with sufficient
differences in characters, and that almost all new segregates
with new names are proposed without any previous phylogenetic
analysis. If we could agree that new taxonomic proposals should
be based on some kind of phylogenetic analysis, then much should
be gained.
Jan-Eric Mattsson, Lund
I believe that genera exist, contrary to the
opinion provocatively expressed by Le Bois. They exist not as
objects, but as landmarks in our way of expressing the diverging
process of evolution. Populations diverge, become isolated, then
reproductively isolated, turn into entities, sharing equal characters
from a common ancestor. This is a continuous process, and thinking
of this it is hard to accept monotypic genera. In Teloschistaceae,
the delimitation of genera is traditionally controversial. Do
we have a single supergenus, a few normally acknowledged, less
well defined genera, or many smaller genera? Caloplaca
is a great example illustrating the evolutionary forces within
a group which we can only observe from one point in time and space.
Together with my colleague C. Wetmore we have recently worked
up a paper on the Gasparriniae for North and Central America.
This group cannot be recognized at generic level based upon the
character states we have today. It might be accepted as a section
or subgenus. However, there are other good natural groups, i.e.
some of the black-fruited and semifruticose Caloplacae.
A new genus formed from entities earlier included in other genera
is in the first place an uncomfortable procedure to learn and
adapt to. "Why this splitting?", we may hear from slightly
irritated readers. "The old name was good enough, etc."
We have all heard this before. But if we have found some new and
valuable information in character states, supported by evidence
from several strong characters I cannot see the reasons why conservatism
or convenience should prefer to hang on to something which was
based upon irrelevant data from the good old days. Some of the
genera from these days were good of course and still stand. Many
were actually very bad. When I started my career, Alectoria,
Lecidea, Lecanora and Parmelia included everything
what we today have divided into a very large number of smaller
groups. I guess that nobody would agree that these four genera
from the early 1970's represent monophyletic groups. Where will
the descriptive process end? Many of us contributed to move the
snowball down hills, and people may ask how will it all end: "as
an avalanche - I guess many would believe - obliterating
the idyllic small ancient village down there, in the Acharian
valley of the past". We can hear the most irritated claim
that we will have nothing but genera left in the Parmeliaceae.
Have we been moving the snowball in the right direction? Yes,
I definitely believe so. In the other direction, i.e. "uphill",
back to the good old days, would be against all natural forces
and impossible at the end. We cannot state that everything which
is published as new on the generic level is great and outstanding.
But who can decide what is right or wrong here? Nimis was provocatively
challenging us with the "Creator" talk. Who can ever
decide what is a good genus or not, or who is our "Lord"?
The "Creators" of Systema Ascomycetum, perhaps?
Where we can actually read what is good or not, or accepted or
not. Life on earth was not made in seven days but merely during
a period of 1.5 billions years. Psiloparmelia or Flavopunctelia
might still be great genera. The enormous number of new groups
which have been separated during the last decades have taught
us a lesson, perhaps to think twice before doing anything. Groups
based upon one character don't seem particularly good. Even using
2 or 3 not very convincing characters in the definition of new
genera doesn't help us much. The so-called genus Gasparrinia
can be defined on 3 not very good characters. That's all. So I
am not going to do it. If somebody would separate the usnic acid
containing Caloplaca as Flavocaloplaca, the vulpinic
acid containing Rhizocarpon as Vulporhizocarpon
or the bluegreen containing Peltigera as Cyanopeltigera,
these groups would probably not be allowed into the "Lords"
system. But who knows... This might pass even quicker than the
Seven Days of Genesis.
Ingvar Kärnefelt, Lund
I am an old man now, but I will say a few things
about taxonomy anyway. First, no reputable taxonomist would describe
a new taxon based on only one character, whatever the character.
The ascus tip (used by some to describe new families) has proved
to be variable within one genus! Then why describe new families
based on this single character? Have they looked at all species
in the genus/family to understand the variability? No. Only the
type species and then usually only one specimen. This is no way
to study evolution/taxonomy. What is going on with systematics?
Do we have to blindly follow anything that is published? Many
do, but the best do not, they evaluate each one, as my old master
taught me. As a result of this teaching, I was one of the last
in North America to still believe in Parmelia. Granted,
there are several good genera there but NOT 90!!!! Do we have
to divide genera until there are only 2-5 species per genus? Many
of these genera have been erected either on a few characters or
because "If I don't do it, someone else will"
(as a famous lichenologist once said). Another reason for describing
new genera is for the "notoriety" of having your name
cited every time someone types a label (on some it even takes
4-5 authors to make up their minds on a nomenclatural change;
some of the new author citations are too long for any label!).
Is this responsible taxonomy or taxonomic inflation? It is time
to remove author citations! Perhaps I have lived too long. Maybe
everything has passed by. I think I received an excellent training
on being a thoughtful taxonomist, but maybe that is not in fashion
now. Maybe now the main goal is to divide and describe. I am sorry
for taxonomy if that is true.
Cliff Wetmore, St. Paul
Many thanks to all contributors. This discussion
was started and finished in less than 30 days using LICHENS-L,
Cliff Smith's listerver (see next section and try it...you can
get most of the original texts, who did not fall under the usual
editorial castigations). Of course, the discussion does not stop
here: it will go on in Montreal, London, and, as far as I know,
it is already going on in many other places, including several
bars and pubs near botanical institutions. In the next issue of
the Newsletter, however, only a very limited space will be available
for this topic, and this will be mainly reserved for contributions
by colleagues without access to e-mail. New proposals for the
next Forum discussion are welcome;
this time, priority will be given to topics outside the field
of taxonomy s.str.
The Editor
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