Alignment: ITS1+5.8S+ ITS2 ....|....| ....|....| ....|....| ....|....| ....|....| ....|....| 5 15 25 35 45 55 Notoseris_sp ---------- -----GCAGA ACGACCTATG AACATTGTAA --CAACAACG GGGTGACGAG Notoseris_psilolepis ---------G CAAGGACAGA ACGACCTGTG AACAT-GTAA --CCACAACG GGGTGACAG- Erythros_amabilis CCGAACCCTG CANA-GCATA ACGACCCGTG AACAT-GTAC --CAACAACT GGGTGTCAG- Erythros_somal TCGAACCGTG CAGA-GCAGA ACGACCCGTG AACAT-GTAC --CTACAACT GGGCGTCAG- AJ633488_S_angust TCGAAAC-TG CAAA-GCAGA ACGACCCGTG AACTT-GTAC --TCACAATC AGGTGATGG- AJ633486_S_crisp TCGAAAC-TG CAAA-GCAGA ACGACCCGCG AACTT-GTAC --TCAAAATC -GGTTATGG- AF473649_S_cichoriacea TCGAACCCTG CAAAAGCAGA ACGACCCGTG AACAT-GTAC --CCATAATC GAGAGTCTG- AF473610_P_spinosus TCGAACCCTG CAAAAGCAGA ACGACCTGTG AACAT-GTAC --CCACAACT GGGAGTCGG- L13956___S_pauciflora TCGAACCCTG CAAA-GCAGA ACGACCCGTG AACAT-GTAC --CCACAACC GGGAGTCGG- AF473653_M_saxatilis TCGAACCCTG CAAAAGCAGA ACGACCCGTG AACAT-GTAC --CCACAACC GGGTGTCGG- AJ633457_C_intybus TCGAACCCTG CAA--GCAGA ACGACCCGTG AACAT-GTAC --CTATAACC GGGAGTCAG- AJ633455_C_spinosum TCGAACCCTG CAAA-GCAGA ACGACCCGTG AACAT-GTAC --CTATAACC GGGAGTCAG- AJ633452_C_endivia TCGAACCCTG CAAA-GCAGA ACGACCCGTG AACAT-GTAC --CTATAACC GGGAGTCAG- AJ581724_M_laciniata TCGAACCCTG CAAAAGCAGA ACGACCCGCG AACGA-GTAC --CCAAATAT GGGAGTTGG- AF386493_A_grandiflora TCGAACCCTG CAACAGCAGA ACGACCCGCG AACAA-GTAC --CCACAATC GGGAGTCAGT AH015020_T_heterophylla TCGAACCCTG CAAA-GCAGA ACGACCCGTG AACAT-GTAA --ATAYAACT CGGTGTTGT- AH015014_S_wildpretii TCGAACCCTG CAAA-GCAGA ACGACCYGTG AACAT-GTAA --ATACAACT CGGTGTTGT- AF422137_S_kirkii TGGAACCCTG CAAA-GCAGA AGGACCCGGG AACAT-GTAA --ATACAAGT TGGTGCTGT- EF107656_H_radicata TCGAACCCTG CATG-GCAGA ACGACCAGTT AACAC-GTAA --ATACAACT GGGTGATGG- PPITS2B__Pre_purpur TCGAACCCTG CAAG-GCAGA ACGACCCGTG AACAT-GTAA --AAACAACT GGGTGATGG- AJ627266_H_leontodontoides TCGAACCCTG CAAG-GCAGA ACGACCAGCG AACAA-GTAA --TTACTACC GGGTGATGG- AJ633298_R_stellatus TCGAACCCTG CAAA-GCAGA ACGACCTGTG AACAC-GTAA --ATACAACT TGGTGATGT- AJ633371_C_vesicaria TCGAACCCTG CTAA-GCAGA ACGACCCGTG AATCT-GTAA --AAACAACA AGGTGATGG- AJ633294_Y_japonica TCGAACCCTG CATG-GCAGA ATGACCCGTG AACAT-GTAA AAATACTACT GGGTGATGG- AJ633293_Y_denticulata TCGAACCCTG CAAA-GCAAA ACGACCCGTG AACAT-GTAA --ATACAACT GGGCGATGG- AJ633337_L_sativa TCGAACCCTG CAAG-GCAGA ACGACCCGTG AACAT-GTAA --CCACAACG GGGTGACCG- AJ633336_L_saligna TCGAACCCTG CAAG-GCAGA ACGACCCGTG AACAT-GTAA --CCACAACG GGGTGACTG- AJ633434_T_barbata TCGAACCCTG CAAA-GCAGA ACGACCCGTG AACAT-GTAC --CAACAACC GGGAGCCGG- AJ633395_P_argyrocomum TCGAACCCTG CAAG-GCAGA ACGACCCGTG GACTT-GTAC --CAACAACT GGGAGACGA- AJ633397_P_echioides TCGAACCCTG CAAG-GCAGA ACGACCCGTG AACTT-GTAC --CAACAACT GGGTGACGA- AJ633384_A_integrifolia TCGAACCCTG CAAA-GCAGA ACGACCCGTG AACTT-GTAC --CAACAACT GGGAGACGG- AJ633444_A_minima TCGAACCCTG CAAA-GCAGA ACGACCCGTG AACAT-GTAC ---AACAACT GGGAGCCGG- ....|....| ....|....| ....|....| ....|....| ....|....| ....|....| 65 75 85 95 105 115 Notoseris_sp GTGAAATGGG CCTTGGTCCT GAT-CCTCTA ACTCCTCCTG ATGTGCATTT GTGGTGCCAT Notoseris_psilolepis -GGAAAWGGG CCTTGGTCCT TAT-CCCCCA TCCCCTCCCG ACATGCATTT GTGGTGCCTT Erythros_amabilis -GGGGATGGG CCTTGGCCCT TAT-CCTTGG CACCTTGTCG GCATGTGTTC GTGGT-GCCC Erythros_somal -GGGGATGGG CCTTGGCCCT TAT-CCTTGG CACCTTGTCG GCATGTGTTT ATGGT-GCCC AJ633488_S_angust -GGTAACAGG CCAAGGCTTG GAA--CCCAG TTGCCTGTCG GCGTGCGTTT GTGTT-GCTT AJ633486_S_crisp -GGCAACAGG GGAAGCCCTC GAA--CCCTG TTACCTGTTG GCGTGCATGC GTGTT-GCTC AF473649_S_cichoriacea -GTATGACGG CTTAGTCCTT CAT-CCCCGG CACCCTGTCG GCGTATGTCG ATGGT-GCCC AF473610_P_spinosus -GTATATTGG CTTAGTCCTT CAT-CCCCGG CACCCTGTCG GCGTATGTCG ATGGT-GCCC L13956___S_pauciflora -TTATGTTGG CGTAGTCCTT CAT-CCCCGA CACCCAGTCG GCGTATGTCG ATGGT-GCCC AF473653_M_saxatilis -GGATACTGG CTCCGGCCGC TATATTCTGG CACCCTGTCG GCGTATGTTT GTGGT-GCCC AJ633457_C_intybus -GTGTATKGG CCTTGGCCCT -AT-CGCTGG CACCCCGTCG GCTTATGTTT GTGGTTGCCC AJ633455_C_spinosum -GGGTATGGG CCTTGGCCCT -AT-CGCTGG CACCCCGTCG GCTTATGTTT GTGGTTGCCC AJ633452_C_endivia -GGGTACGGG CCTTTGCCCT -AT-CGCTGG CACCCCGTCG GCTTATGTTT GTGGTTGCCC AJ581724_M_laciniata -GGATATTGG CTTTGGTCTA TAT-CCCTGG CACCCTGCCG GCATATGTTT GTGGT-GCCC AF386493_A_grandiflora -GGATGTTGG CTCCGGTCTA TAT-CCACGA CGCCCTGCCG GCGTGTGTTT GTGAT-GCCC AH015020_T_heterophylla -TGAGATGGG CCTTAGGTTC TGATCAGCAA TACCAT-CCG GTTTGTTTCC ATGGT-ATCW AH015014_S_wildpretii -TGAKATGAG CCTTAGKTTY TGATCAGCAA TACCAT-CCG GTTTGTTTCC ATGGT-ATCT AF422137_S_kirkii -TGTGATGGG CTTTATGTTT AGATCAGCAA CGCCAT-CCG GTGTGTTTTC AAGGT-ATCT EF107656_H_radicata -GGAGATGGG CCTTGGCTCT TTT--CCTTA TCCCCTCTCG GTGTGTGTTT GTGAT-GCCT PPITS2B__Pre_purpur -GGTGATGGG CCTCTGTCCT TAT--CCCCA TCCC-TCCCG GCGTGCATGC GTGGT-GCCT AJ627266_H_leontodontoides -GGAGATGGA CCTTGGTTCT TAT--TCCCA TCCCCTCTCC ATATGCATCT GTGGT-GCTT AJ633298_R_stellatus -CGAGATGGG CCTTGGTCCT GAT-CCTCAA AACCCTCT-G ACCAGCAATT GTGTT-GTCT AJ633371_C_vesicaria -GGGGATGGT CCTTGGACCA GAT-CCTCAA AGCCTCCCTG GCGTGCAAAT ATGGT-GTCT AJ633294_Y_japonica -GGAGACGGT C-CTGGTCTT GAT-CCTCAA TGCC-TCCCG ACTTGTGTGC ATGGT-GTCT AJ633293_Y_denticulata -GGAGATGGG CATTGGTCCT GAT-CCTCAT CACC-TTCTG GCGTGCGTGT ATGGT-GGCT AJ633337_L_sativa -TGATAAGGG CCTCGGTCCT TAT-CCCCTA ACCCTTCCCG ACGTGAGTTC GTGGT-GTCT AJ633336_L_saligna -TGATATGGG CCTCGGTCCT TAT-CTCCTA ACCCTTCCTG ACGTGAATCT GTGGT-GTCT AJ633434_T_barbata -AGAGATGGG CCTCGGTCCC TTT-CTTCGG CGCCCTGCCG GCGTGTGTTT TTGGT-CTCC AJ633395_P_argyrocomum -GGAGACGGA CCTTGGTCCA GAT-CCCCGC CACCCTCCCG GCTTGCGTTC ATGGT-GCCC AJ633397_P_echioides -GGAGACGGA CCTTGGTCCA TAT-CCCCGC CACCCTCCCG GCTTTCGTTC ATGAT-GCCC AJ633384_A_integrifolia -GGAGACGGA CCTCGGTCTG GAT-CCTCGC CACCCTCCCG GCTTTCGTTC ATGATGTCCC AJ633444_A_minima -AGAGATGGG CCATGGCCCT TTT-CTTTGG CACCTTGTCG GCATATGTTT GTGGT-GACC ....|....| ....|....| ....|....| ....|....| ....|....| ....|....| 125 135 145 155 165 175 Notoseris_sp CTTATTGTGG CACCATGGAT GTCCCGTCGG -ACCATAACA WACCCCGG-C ACGGCATGTG Notoseris_psilolepis GTA-TTGGGG CATCATTGAT GTCTTTGTCG GACCATAACA AACCCCGG-C ACGGAATGTG Erythros_amabilis CAA-CCGGGG TGCTATGGAC TTCATGCTGG CACCATAACA AACCCCGG-C ACGGCATGTG Erythros_somal CAA-TCGGGG TGCCATGGAC TTAATGCTGG CACCATAACA AACCCCGG-C ACGGCATGTG AJ633488_S_angust TAT-TTGGAG CGGCACAGAT GTTCCGCTGG CAATCTAACC AA-CCCCGGC ACGGAATGTG AJ633486_S_crisp CTT-TTGGAG CTCCACGGAC GTTTCGTTGA CA-TCTAACC AAACCCCGGC ACGGAATGTG AF473649_S_cichoriacea AAT-TCAGGG TGGCATTGAT GTAACGTTGG CGCTTTAACA AACCCCGG-C ACGACATGTG AF473610_P_spinosus ATA-CCAGGG TGCCATTGAT GTCACGTTGG CATTTTAACA AACCCCGG-C ACGGCATGTG L13956___S_pauciflora AAT-TCAGGG TGTCATTGAT GTCACGTTGG CACTTTAACA AACCCCGG-C ACGGCATGTG AF473653_M_saxatilis CAT-TCGGGG TTCCGTGGAC GT-ACGTTGG CACTTTAACA AACCCCGG-C ACGGCATGTG AJ633457_C_intybus CAT-TTGGGG TGCCATGGAT TTTAATCCGG CACCATAACA AACCCCGGGC ACGGTATGTG AJ633455_C_spinosum CAT-TTGGGG TGCCATGGAT TTTAATCCGG CACCATAACA AACCCCGG-C ACGGTATGTG AJ633452_C_endivia CAT-TTGGGG TGCCATGGAT TTTAATCCGA CACCATAACA AACCCCGG-C ACGGTATGTG AJ581724_M_laciniata CGT-TAGGGG TGCCAYTTAT GTCATGTTGG CACATTAACA AACCCCGG-C ACGACATGTG AF386493_A_grandiflora CAT-CCGGGG TTTCATGGAT CTCACGTTGG CACATTAACA AACCCCGG-C ACGACATGTG AH015020_T_heterophylla CTT-TTATGG TACCATGGAT GTCAAATCG- -ATTATAACA AATCCCGG-C ACGGCATGTG AH015014_S_wildpretii CTT-TTATGG TACCATGGAT GTCAAATCGG -ATTATAACA AACCCCGG-C ACGGCATGTG AF422137_S_kirkii CTT-TTGTGG TACCATGGAT GTCCCATCGG -ACTATAACA AACCCCGG-C ACGGCATGTG EF107656_H_radicata CTT-TTGGGG CGCCACTGAC GTCATGCTGA -ACCTTAACA AACCCCGG-C ACGGCATGTG PPITS2B__Pre_purpur CGT-TCGGGG CACCATAGAT GTTATGTCGG -ACTATAACA ACCCCCGG-C ACGGCATGTG AJ627266_H_leontodontoides CTT-TTGGGG TGCCATGGAT GTCATGTTGG -ACCATAACA AACCCCGG-C ACGGTATGTG AJ633298_R_stellatus CTT-TTGGGG CACCATGGAT GCTTGGTTGG ACTA-TAACA AACCCCGG-C ACGGAATGTG AJ633371_C_vesicaria CTT-TTGGGA GCCCATGGAT GTCTCGTCAG ACT---AACA AACCCCGG-C ACGGAATGTG AJ633294_Y_japonica TGT-ACAGGC CACCATGTAT GTCTCGTTGG ACCAATAACA AACCCCGG-C ACGGAATGTG AJ633293_Y_denticulata CGT-TTGGGC TACCATGTAT GTCTCGTTGG AT---TAACA AACCCCGG-C ACGGAATGTG AJ633337_L_sativa TTT-TTGGGG CATCATGGA- -TTCCGTTGG -ACCATAACA AAACCCCGGC ACGGTATGTG AJ633336_L_saligna CCT-TTGGGG CATCAGGGA- -TTCCGTCGG -GCCATAACA AAACCCCGGC ACGGCATGTG AJ633434_T_barbata CAA-TCGGGG CGCCATGGAT ATCATGCCGG CACCTTAACA AACCCCGG-C ACGGAATGTG AJ633395_P_argyrocomum CGT-TCGGGT CGTCATGGAT GTCATGTCGG AAACATAACA ACCCCCGG-C ACGGAATGTG AJ633397_P_echioides CAT-CCGGGT CGTCATGGAT GTCATGTCGG ---CATAACA ACCCCCGG-C ACGGAATGTG AJ633384_A_integrifolia CGT-GCGGGC CGTCATGGAT GTCATGCCGG AAACATAACA ACCCCCGG-C ACGGAATGTG AJ633444_A_minima CTT-TTGGGA TGCCATGGAT GTCATGCTGA CACCTTAACC AACCCCGG-C ACGGAATGTG ....|....| ....|....| ....|....| ....|....| ....|....| ....|....| 185 195 205 215 225 235 Notoseris_sp CCAAGGAAAA CAAA-GAATG AGAAGGACAC ATCTTGTATC GTCCCGTTC- GCKGTGTGCG Notoseris_psilolepis CCAAGGAAAA CAAA-AATTG AGAAGGACAA GCCCCGTATC GCCCCGTTC- GCGGTGTGTA Erythros_amabilis CCAAGGAAAA CAAT-AAATG AGAAGGATGC GTCCAGCATC GTCCCGTTC- GCGGTGTGCG Erythros_somal CCAAGGAAAA CAAT-AAATG AGAAGGACGC GTCCAGTATC GTCCCGTTT- GCGGTGTGCG AJ633488_S_angust CCAAGGAAAA CAAA-ATAAA AGAAGGGCAC GCCTCGTGTT GCCCCGTTC- GCGGTGTGCA AJ633486_S_crisp CCAAGGAAAA CAAA-ACAAA AGAAGGGCGT GCCTCGTGTT GCCCCGTTC- GCGGTGTGCA AF473649_S_cichoriacea CCAAGGAAAA CAAT-AACTG AGAAGGAC-C RTCCATTATC GCCCCGTTC- GCGGTGTGCG AF473610_P_spinosus CCAAGGAAAA CAAT-AACTG AGAAGGAC-C GTCCCTCATC GCCCCGTTC- GCGGTGTGCG L13956___S_pauciflora CCAAGAAAAA CAAT-AACTG AGAAGGAC-C CTCAGGCATT GCCCCGTTT- GCGGTGTGCG AF473653_M_saxatilis CCAAGGAAAA CAAT-AAATG AGAAGGACGC GTCCATTATC GCCCCGTTC- GCGGTGTGCG AJ633457_C_intybus CCAAGGAAAA CAAT-AAATG AGAAGGATAC GTCCAACTTT GTCCCGTTC- GCGGTGTGCA AJ633455_C_spinosum CCAAGGAAAA CAAC-AAATG AGAAGGATGC GTCCAACTTT GTCCCGTTC- GCGGTGTGCA AJ633452_C_endivia CCAAGGAAAA CAAC-AAATG AGAAGGATGC GTCCAACTTC GTCCCGTTC- GCGGTGTGCG AJ581724_M_laciniata CCAAGGAAAA TATT-AAATG AGAAGGACGC GTCCATTATC GCCCCGTTC- GCGGTGTGTG AF386493_A_grandiflora CCAAGGAAAA TATT-AAATG AGAAGGACGC GTCCATTATC ACCCCGTTC- GCGGTGTGTG AH015020_T_heterophylla CCAAGGAAAA CGAA-ATATR AGAAGGTATC YACTTGATTT GCCCCGTTTT ACGGTGTGCA AH015014_S_wildpretii CCAAGGAAAA CGAA-ATATA AGAAGGTATC TACTTGATTT GCCCCGTTTT ACGGTGTGCA AF422137_S_kirkii CCAAGGAAAA TTAA-ATAAA AGATGCTATT TACTTGATCT GCCCCGTTTT ACGGTGTGCA EF107656_H_radicata CCAAGGAAAA CAA--AATCG AGAAGGACGC GTCTTGTGTT GCCCCGTTC- GCGGTGTGCA PPITS2B__Pre_purpur CCAAGGAAAA CAAATAAAAG AGAAGGACTC GTCTTGTGTT GCCCCGTTC- GCGGTGTGCA AJ627266_H_leontodontoides CCAAGGAAAA CAA--AATTG AGAAGGACTC ATCCTGTGTT GCCCCGTTC- GCGGTGTGCA AJ633298_R_stellatus CCAAGGAAAA CAAA-AATTG AGAAGGACTC GTCTTGTTAT GCCCCGTTT- GCGGTGTGCA AJ633371_C_vesicaria CCAAGGAAAA CATA-A-TTG AGAAGGACTC GACCTGTTAT GCCCCGTTT- TCGGTGTGCA AJ633294_Y_japonica CCAAGGAAA- ---------- ---------- ---------- ---------- ---------- AJ633293_Y_denticulata CCAAGGAAAA CAAA-AAATA AGAAGGACTC GACCAGTTA- GCCCCTTTT- GTGGTGTGCT AJ633337_L_sativa CCAAGGAAAA CAA--AAATG AGAAGGACAC TACCTGTTTC GCCCCGTTT- GCGGTGTGCG AJ633336_L_saligna CCAAGGAAAA CTA--AAATG AGAAGGACAC TTCCTGTTTG GCCCCGTTC- GCGGTGTGCG AJ633434_T_barbata CCAAGGAAAA CAAT-AAATG AGAAGGATGC GTCCAGCATC GCCCCGTTC- GCGGTGTGCG AJ633395_P_argyrocomum CCAAGGAAAA CAAC-AAATG AGAAGGACTC ATCCTGTGTT GTYCCGTTC- GCGGTGTGCA AJ633397_P_echioides CCAAGGAAAA CAAC-AAATG AGAAGGACTC ATCCTGTGYT GTCCCGTTC- GCGGTGTGCA AJ633384_A_integrifolia CCAAGGAAAA CAAC-AAATG AGAAGGAAGC ATCCGGTGTT GCCCCGTTC- GCGGTGTGCA AJ633444_A_minima CCAAGGAAAA CAAT-AAATG AGAAGGACAC GTCAAGCACT GCCCCGTTT- GCGGTGTGCA ....|....| ....|....| ....|....| ....|....| ....|....| ....|....| 245 255 265 275 285 295 Notoseris_sp TGAGGGTTGT GGC-CTCCTT GGAATCA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC Notoseris_psilolepis TGCGGGTCGT GGC-CTCCTT GGAATCA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC Erythros_amabilis TGTTGGTCGT GGC-CTCCTT GGAATCA-TA AACGACTCTC GGCAACGGAT ATCTCGGCTC Erythros_somal TGTTGGTCGT GGC-CTCCTT GGAATCA-TA AACACNTCTC GGCAACGGAT ATCTCGGCTC AJ633488_S_angust TGCTTGTCGT GGC-CTCCTG -AAA-CA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC AJ633486_S_crisp CGCGGGTCGT GGC-CTCCTG GAAA-CA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC AF473649_S_cichoriacea TGTTGGCGTG -TC-CTCCTT GAAATCA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC AF473610_P_spinosus TGTTGGCGTG -TC-CTCCTT GAAATCA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC L13956___S_pauciflora TGTTGGCGTG -TC-CTCCTA GAAATCA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC AF473653_M_saxatilis TGGTGGCGTG -GC-CTCCTT GAAATCA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC AJ633457_C_intybus TGTTGGTCGT GGC-CTCCTT AGAATCA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC AJ633455_C_spinosum KGTTGGTCGT GGC-CTCCTT AGAATCA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC AJ633452_C_endivia TGTTGGTCGT GGC-CTCCTT AGAATCA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC AJ581724_M_laciniata TCTTGGCGTT -AC-CTCCTT AAAATTAACA AACGACTCTC GGCAACGGAT ATCTCGGCTC AF386493_A_grandiflora TCTTGGCGTT TGC-CTCCTT GAAATTAACA AACGACTCTC GGCAACGGAT ATCTCGGCTC AH015020_T_heterophylla TGCAGGTGGT AGCATTCTTT AAAATA--CA ---------- ---------- ---------- AH015014_S_wildpretii TGCAGGTGGT AGCATTCTTT AAAATA--CA ---------- ---------- ---------- AF422137_S_kirkii TACAGGTGGT AGCCTTCTTT AAAACA--CT AATGACTCTC GGCGACGGAT ATCTCGGCTC EF107656_H_radicata TGCGGGCCGT GGC-CTTTTT ATAATTA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC PPITS2B__Pre_purpur TGCTGGACGT GGC-CTCCTT GGAATCA--- ---------- ---------- ---------- AJ627266_H_leontodontoides TGCCGGTTGT GGC-CTCTTT ATAATTA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC AJ633298_R_stellatus TACTGGTCGT GGC-CTGCTT GGAATAA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC AJ633371_C_vesicaria TGCTGGTCGT GGC-CTCCTT TGAATCA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC AJ633294_Y_japonica ------TCGT GGC-CTCCCT GGAATCA-TA AACGACTCTC GGCAACGGAT ATCTCGGCTC AJ633293_Y_denticulata TACTGGTTGT GGC-CTCCTT TGAATCA-AA AACGACTCTC GGCAACGGAT ATCTCGGCTC AJ633337_L_sativa TACAGGTCGT GGC-CTCCTT GGAATCA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC AJ633336_L_saligna TGCAGGTCGT GGC-CTCCTT GGAATCA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC AJ633434_T_barbata TGCTGGTCGT GGC-CTCCTT GGAATCA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC AJ633395_P_argyrocomum TACAGGATGC GGC-CTCCTT GAAATCA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC AJ633397_P_echioides TACAGGATGC GGC-CTCCTT GAAATCA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC AJ633384_A_integrifolia TCCGGGATGC GGC-CTCCTT GAAATCA-CA AACGACTCTC GGCAACGGAT ATCTCGGCTC AJ633444_A_minima TGTTGGTCGT GGT-CTCCTT GGAATCA-TA AACGACTCTC GGCAACGGAT ATCTCGGCTC ....|....| ....|....| ....|....| ....|....| ....|....| ....|....| 305 315 325 335 345 355 Notoseris_sp ACGCATCGAT GAAGAACGTA GCAAAATGC- ---------- ---------- ---------- Notoseris_psilolepis ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA Erythros_amabilis ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA Erythros_somal ACGCATCGAT GAAGAACGCA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AJ633488_S_angust ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AJ633486_S_crisp ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AF473649_S_cichoriacea ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AF473610_P_spinosus ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA L13956___S_pauciflora TCGCATCGAT GAAGAACGTA GCGAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AF473653_M_saxatilis ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AJ633457_C_intybus ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AJ633455_C_spinosum ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AJ633452_C_endivia ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AJ581724_M_laciniata ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AF386493_A_grandiflora ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AH015020_T_heterophylla ---------- ---------- ---------- ---------- ---------- ---------- AH015014_S_wildpretii ---------- ---------- ---------- ---------- ---------- ---------- AF422137_S_kirkii ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA EF107656_H_radicata ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA PPITS2B__Pre_purpur ---------- ---------- ---------- ---------- ---------- ---------- AJ627266_H_leontodontoides ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AJ633298_R_stellatus ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AJ633371_C_vesicaria ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AJ633294_Y_japonica ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AJ633293_Y_denticulata ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AJ633337_L_sativa ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AJ633336_L_saligna ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AJ633434_T_barbata ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AJ633395_P_argyrocomum ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AJ633397_P_echioides ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AJ633384_A_integrifolia ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA AJ633444_A_minima ACGCATCGAT GAAGAACGTA GCAAAATGCG ATACTTGGTG TGAATTGCAG AATCCCGTGA ....|....| ....|....| ....|....| ....|....| ....|....| ....|....| 365 375 385 395 405 415 Notoseris_sp ---------- ---------- ---------- ---------- ----TGAGGG CACGCCTGCC Notoseris_psilolepis ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGMCATC CGGCTGAGGG CACGCCTGCC Erythros_amabilis ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATC CGGCCGAGGG CACGCCTGCC Erythros_somal ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATC CGGTCGAGGG CACGCCTGCC AJ633488_S_angust ACCATCGAGT TTTTGAACGC AAGTTGCGCC CAAAGCCATC CGGCCGAGGG CACGCCTGCC AJ633486_S_crisp ACCATCGAGT TTTTGAACGC AAGTTGCGCC CAAAGCCATC CGGCTGAGGG CACGTCTGCC AF473649_S_cichoriacea ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATT CGGCCGAGGG CACGCCTGCC AF473610_P_spinosus ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATT CGGCCAAGGG CACGCCTGCC L13956___S_pauciflora ACCATCGAGT TTTTGAACGC AAGTTGCGCC CAAAGCCATT CGGAAGAGGG CACGCCTGCG AF473653_M_saxatilis ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATC CGGCCGAGGG CACGCCTGCC AJ633457_C_intybus ACCATCGAGT TTTTGAACGC AAGTTGCGCC CAAAGCCATC CGGCCGAGGG CACGCCTGCC AJ633455_C_spinosum ACCATCGAGT TTTTGAACGC AAGTTGCGCC CAAAGCCATC CGGCCGAGGG CACGCCTGCC AJ633452_C_endivia ACCATCGAGT TTTTGAACGC AAGTTGCGCC CAAAGCCATC CGGCCGAGGG CACGCCTGCC AJ581724_M_laciniata ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATC CGGCTGAGGG CACGCCTGCC AF386493_A_grandiflora ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATC CGGCTGAGGG CACGCCTGCC AH015020_T_heterophylla ---------- ---------- ---------- ---------- ---------- ---------- AH015014_S_wildpretii ---------- ---------- ---------- ---------- ---------- ---------- AF422137_S_kirkii ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATC CGGCCGAGGG CACGCCTGCC EF107656_H_radicata ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATC CGGCCGAGGG CACGCCTGCC PPITS2B__Pre_purpur ---------- ---------- ---------- ---------- ---------- ---------- AJ627266_H_leontodontoides ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATC CGGTCGAGGG CACGCCTGCC AJ633298_R_stellatus ACCATCGAGT TTTTGAACGC AAGTTGCGCC CAAAGCCATC CGGCTGAGGG CACGCCTGCC AJ633371_C_vesicaria ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATC CGGTTGAGGG CACGCCTGCC AJ633294_Y_japonica ACCATCGAGT TTTTGAACGC AAGTTGCGCC CAATGCCATT TGGTTGAGGG CACGCCTGCC AJ633293_Y_denticulata ATCATCGAGT TTTTGAACGC AAGTTGCGCC CAAAACCATC CGGTTGAGGG CACGCCTGCC AJ633337_L_sativa ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATC CGGCTGAGGG CACGCCTGCC AJ633336_L_saligna ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATC CGGCTGAGGG CACGCCTGCC AJ633434_T_barbata ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATC TGGCCGAGGG CACGCCTGCC AJ633395_P_argyrocomum ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATC CGGCCGAGGG CACGCCTGCC AJ633397_P_echioides ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATC CGGCCGAGGG CACGCCTGCC AJ633384_A_integrifolia ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATC CGGCCGAGGG CACGCCTGCC AJ633444_A_minima ACCATCGAGT TTTTGAACGC AAGTTGCGCC CGAAGCCATT CGGTCGAGGG CACGCCTGCC ....|....| ....|....| ....|....| ....|....| ....|....| ....|....| 425 435 445 455 465 475 Notoseris_sp TGGGCGTTAC GCTTCGCGTC ATC---CCC- A-CTA--TAC TT--CCCCAT TCGG-TAGTA Notoseris_psilolepis TGGGCGTCAC GCTTCGTGTC GACTACCCCA A-CCA-TAAC TTACCCCAAA CAGG-TAGTA Erythros_amabilis TGGGCGTCAC GCATCGCATC GCC---CCCA A-CCAA-TGC AT--CCCCTA T-GG-GACGC Erythros_somal TGGGCGTCAC GCATCGCGTC GCC---TCCA A-CCA--TGC AT--CCCCCA T-GGGATG-C AJ633488_S_angust TGGGCGTCAC GCATCGCGTC GTT---CCC- --CCA--TGT AT--CCT-AT TTGG-AATGC AJ633486_S_crisp TGGGCGTCAC GCATCGCGTC GCT------- ----A--TCC AT--CCT--T CAAG-GATGT AF473649_S_cichoriacea TGGGCGTCAC GCATCGCGTC GCC---CCCA A-CCA--TTC AT--CCC-TC TAAG-GATG- AF473610_P_spinosus TGGGCGTCAC GCATCGCGTC GCC---CCCA A-CCA--TTC AT--CCC-TA TAAG-GATGC L13956___S_pauciflora TGGGCGTCAC GCATCGC-TC GCC---CCCA A-CCA--TGC AT--CCC-CT AAAG-GATGC AF473653_M_saxatilis TGGGCGTCAC GCATCGCGTC GCC---CCCA C-CCA--TTC GT--CTC-CA TAGG-GATGC AJ633457_C_intybus TGGGCGTCAC GCATCGCGTC GCC---CCCA A-CCA--TGC AT--CCCTTA TCGG-GACAC AJ633455_C_spinosum TGGGCGTCAC GCATCGCGTC GCC---CC-A A-CCA--TGC AT--CCCTTA TCGG-GACAC AJ633452_C_endivia TGGGCGTCAC GCATCGCGTC GCC---CCCA A-CCA--TGC AT--CCCTTA TCGG-GACAC AJ581724_M_laciniata TGGGCGTCAC GCATCGCGTC GCC---CCC- A-CCA--TTC AT--CCC-AA T-GGGCATGT AF386493_A_grandiflora TGGGCGTCAC GCATCGCGTC GCC---CCC- A-CCA--CTC AT--CCC-TA TAGG-CATGA AH015020_T_heterophylla ---------- ---TCGCGTC GCC---CCCC G-CCAA--AC AT--CCCCAA A-GGGTAATC AH015014_S_wildpretii ---------- ---TCGCGTC GCC---CCCC G-CCAA--AC AT--CCCCAA A-GGGTAATC AF422137_S_kirkii TGGGCGTCAC GCATCTCGTC GCC---CCCT G-CCA--CAC AT--CCT-AA AGGTGTAATA EF107656_H_radicata TGGGCGTCAC GCATCGCGTC GCC---CCCA C-CAA----- AT--TTC--- -----CAAAT PPITS2B__Pre_purpur ---------- --ATCGC-TC GCC----CCC AT-CA--TAC AA--CCC--A ACCGGTTGTC AJ627266_H_leontodontoides TGGGCGTCAC GCATCGCGTY GCC----CCC A-CCAA-AAA TTG-CCC--A ACCGGTAATC AJ633298_R_stellatus TGGGCGTCAC GCATCGCATT GCC---CCCC A-CCA--TAA CCT-TCTC-A ACGAGTAGTT AJ633371_C_vesicaria TGGGCGTCAC GCATCGCGTC GCC---CCCC A-CCA--TAT TCT-TCCTAA ACGGGTTGTT AJ633294_Y_japonica TGGGCGTCAC GCATCGCGTC GCC---CCCC TTCCA--TAC -T-TCCTT-A ACCGGTACAT AJ633293_Y_denticulata TGGGCGTCAC ACATCGCGTT GCC---CCCC A-CCA--CAC -T-TCCCT-A ATGGGTACTC AJ633337_L_sativa TGGGCGTCAC GCATCGCGTC GCT---CCCC A-CCA--TAC CT--CCCC-A ACGGGTTGGC AJ633336_L_saligna TGGGCGTCAC GCATCGCGTC GCT----CCC GACCA--TAC CT--CCCC-A ACGGGTTGGC AJ633434_T_barbata TGGGCGTCAC GCATCGCGTC GCC---CCTA A-CCA--TTC AT--CCCC-T ATGG-TGGTG AJ633395_P_argyrocomum TGGGCGTCAC GCATCGCGTC GCC---CCC- A-CCA--AGC AT--TCC-TC T-GGGCATGC AJ633397_P_echioides TGGGCGTCAC GCATCGCGTC GCC---CCC- A-CCA--AGC AT--CCC-TA TTGG-GATAC AJ633384_A_integrifolia TGGGCGTCAC GCATCGCGTC GCC---CCCC A-CCT--TCC AT--CCC-CA T-GGGGATTG AJ633444_A_minima TGGGCGTCAC GCATCGCGTC GCC---CCC- AACCA--TTC GT--CCCTTA -CGGGGATGC ....|....| ....|....| ....|....| ....|....| ....|....| ....|....| 485 495 505 515 525 535 Notoseris_sp ATGGTGTT-G GGGGCGGATA ATGGCCTCCC GTGCTTTTGT TGCGGTTGGC CTAAATAGGA Notoseris_psilolepis GTGGTGTT-G GGGRCGGATA ATGGCCTCCC GTGCTTGTGT TGCGGTTGGC CTAAATAGGA Erythros_amabilis TTGGCATC-- GGGGCGGAAA TTGGCCTCCC GTGCTTTTGG TGCGGTTCGC CTAAACTGGA Erythros_somal TTGGCATC-- GGGGCGGAGA TTGGCCTCCC GTGCTTTTGG TACGGTTTGC CTAAATTGGA AJ633488_S_angust ATGTTATC-- GGAGCGGATA TTGGCCTCCC GTGCTCTTTG TGCGGTTGGC CCAAACACGA AJ633486_S_crisp ATGCTACC-- GGGGCGGAGA ATGGCCTCGT GTGCTCTAGG CGTGCTTGGC CCAAACACGA AF473649_S_cichoriacea TTGGCGTC-- GGGGCGGAGA TTGGCCTCCC GTGCCTTTGG TGCGGTTGGC CTAAACCAGA AF473610_P_spinosus TTGGCATC-- GGGGCGGAGA TTGGCCTCCC GTGCCTTTGG TGCGGTTGGC CTAAACTGGA L13956___S_pauciflora TTGGTGTC-- GGGGCGGAGA TTGGCCTCCC GTGCCTTTGG TGCGGTTGGC CTAAACTAGA AF473653_M_saxatilis TTGGCGTC-- GGGGCGGATA TTGGCCTCCC GTGCTTTTGG TGCGGTTGGC CTAAACTGGA AJ633457_C_intybus ATGGCATC-- GGGGCGGAGA TTGGTCTCCC GTGCTTATGG TGCGGTTGGC CTAAACTGGA AJ633455_C_spinosum ATGGCATC-- GGGGCGGAGA TTGGTCTCCC GTGCTTATGG TGCGGTTGGC CTAAACTGGA AJ633452_C_endivia ATGGCATC-- GGGGCGGAGA TTGGTCTCCC GTGCTTATGG TGCGGTTGGC CTAAACTGGA AJ581724_M_laciniata TTGGCATC-- GGGGCGGATA TTGGACTCCC GTGCCTTTGG TGCGGTTGTC CTAAACTGGA AF386493_A_grandiflora GTGGCTTT-- GGGGCGGAGA TTGGTCTCCC GTGCTTTGTG TGCGGTTGGC CTAAACTGAA AH015020_T_heterophylla ATGGTGAT-G GGGGCGGAAA TTGGCCTCCC GTTCTTGT-G TCTGGTTGGC CTAAAGATGA AH015014_S_wildpretii ATGGTGAT-G GGGGCGGAAA TTGGCCTCCC GTTCTTGT-G TCTGGTTGGC CTAAAGATGA AF422137_S_kirkii ATGGTCAT-G GTGGCGGAAA TTGGCCTCCC GTTCTTGT-G TTTGGTTGGC CTAAAGATGA EF107656_H_radicata CTGGT--T-G GGGGCGGAGA TTGGCCTCCC GTACCTGT-- TGTGGTTGGC CTAAAAAGGA PPITS2B__Pre_purpur ATGGTGAT-- GGGGCGGAGA TTGGTCTCCC GTACTTGT-- TCCGGTTGGC CMAAAAAGGA AJ627266_H_leontodontoides ATTTTGTT-G GGGGCGGAGA TTGGCCTCCC GTACATGT-- TGCGGTTGGC CTAAAAATGA AJ633298_R_stellatus TTGGTGATT- GGGGCGGAGA TTGGTTTCCC ATGCTTGTAG TGTGGTTGGC CTAAATAGGA AJ633371_C_vesicaria T-GTTGTTTG GGGGCGGAGA TTGGCCTCCC GTGCTTATGG TGCGGTTGGC CTAAATATGA AJ633294_Y_japonica CTGGTGCT-G GGGGCGGAGA TTGGCCTCCC ATGCCTGTGG TGTGGCTGGC CTAAAGAGTT AJ633293_Y_denticulata ATGGTGCTTG GGGGCGGATA TTGGCCTCCC GTGCTTTTGG TGCGGTTGGC CTAAATAGGA AJ633337_L_sativa ATGGTGTT-G GGGGCGGATA ATGGCCTCCC GTGCTTGTGT TTCGGTTGGC CTAAATAAGA AJ633336_L_saligna ATGGTGTT-G GGGGCGGATA ATGGCCTCCC GTGCTTGTGC TTCGGTTGGC CTAAATAAGA AJ633434_T_barbata TTGGCATC-- GGGGCGGATA TTGGTCTCCC GTGCTGTTGG TGCGGTTGGC CTAAACTGGA AJ633395_P_argyrocomum TTGGGATC-- GGGGCGGAGA TTGGCCTCCC ATGCCTTCGG TGTGGTTGGC CTAAACCGGA AJ633397_P_echioides TTGGCATC-- GGGGCGGAGA TTGGCCTCCC ATGCCTTTGG TGTGGTTGGC CTAAACCGGA AJ633384_A_integrifolia TTGGCATC-- GGGGCGGAAA TTGGCCTCCC ATGCTTCTGG TGTGGTTGGC CTAAACTAGA AJ633444_A_minima TTGGCATC-- GGGGCGGAGA TTGGTCTCCC GTGCTTTTGG TGCGGTTGGC CTAAACTGGA ....|....| ....|....| ....|....| ....|....| ....|....| ....|....| 545 555 565 575 585 595 Notoseris_sp GTTCCCTT-C GGCGGACGCA CGACTAGTGG TGGTTGAACA GACCCTCGTC TTGTGTTGTG Notoseris_psilolepis GTTCCCTT-C GGCGGATGCA CGACTAGTGG TGGTTGAAAA GACCCTCGTA CTATGTGGTG Erythros_amabilis GTCCCCTT-C NGTGGACGCA CGACTAGTGG TGGTTGAAAA GACCCTCGTC TTGTGTTGTG Erythros_somal GTCCCCTT-C GGTGGACGCG CGACTAGTGG TGGTTGGAAA GACCCTCGTC TTGTGTTGTG AJ633488_S_angust GTCCCCTG-T GGTGGACGCA CGACAAGTGG TGGTTGAATA GGCCCTCGTC TTCGGTCGTG AJ633486_S_crisp GTCCCCTT-C GGTGGACGCA CGACTAGTGG TGGTTGAATA GGCCCTCGTC TTTTGTCGTG AF473649_S_cichoriacea GTCCCCTT-C GGTGGACGCA CGACTAGTGG TGGTTGAATA GACCCTCGTC TTGTGTTGTG AF473610_P_spinosus GTCACCTA-C GGTGGACACA CGACTAGTGG TGGTTGAATA GACCCTCGTC TTATGTTGTG L13956___S_pauciflora GT-ACCTT-C GGTGGACGCA CAACTAGTGG TGGTTGAATA GACCCTCGTC TTGTGTTGTG AF473653_M_saxatilis GTCACCTT-C GGTGGACGCA CGACTAGTGG TGGTTGAACA GACCCTCGTA TTGTGTTGTG AJ633457_C_intybus GTCCCCTT-C GGTGGACGCA CGACTAGTGG TGGTTGAAAA GACCCTCGTA TTGTGTCGTG AJ633455_C_spinosum GTCCCCTT-C GGTGGACGCA CGACTAGTGG TGGTTGAAAA GACCCTCGTA TTGTGTCGTG AJ633452_C_endivia GTCCCCTT-C GGTGGACGCA CGACTAGTGG TGGTTGAAAA GACCCTCGTA TTGTGTCGTG AJ581724_M_laciniata GTCACCTT-G GGTTGACGCA CGACTAGTGG TGGTTGAATA GACCCTCGTC TTAAGTTGTG AF386493_A_grandiflora GTCACCTT-T GGTGGACGCA CAACTAGTGG TGGTTGAATA GACCCTCGTC TTTTGTTGTG AH015020_T_heterophylla GTCTCC-TAC GGCGGATGCA CAACTAGTGG TGGTTGAACA GACCCTCGTC TTGTGTTGTG AH015014_S_wildpretii GTCCCCCTAC GGCGGATGCA CAACTAGTGG TGGTTGAACA GACCCTCGTC TTGTGTTGTG AF422137_S_kirkii GTCCCCTTAG GGCGGATGCA CAACTAGTGG TGGTTGAATA GACCCTCGTC TTGTGTTGTG EF107656_H_radicata GTCCCCTT-C GGTGGACACA CGACTAGTGG TGGTTGAACA GACCCTCGTC TT-TATTGTG PPITS2B__Pre_purpur GTCCCCTT-C AGRGGACACA CGACTAGTGG TGGTTTAACA GACCCTTGTC TT-TATCGTG AJ627266_H_leontodontoides GTCCCCTT-C AGCGGACACA CGGCTAGTGG TGGTTGAACA GACCCTCGTC TT-TATCGTG AJ633298_R_stellatus GTTCCCTT-T GGTGGACACA CGGCTAGTGG TGGTTGTATA GACCCTCTTT TTTTGCTGTG AJ633371_C_vesicaria GTCCCCTT-C GGTGGATACA CGGCTAGTGG TGGTTGTATT GACCCTCGTA TTGTGTCGTG AJ633294_Y_japonica GTCCCATT-T GGTGGACACA CGGTTAGTGG TGGTTGTATA GACCCTCGTC TTGTCCCGTG AJ633293_Y_denticulata GTCCCCTT-T GGTTGACACA CGGCTAGTGG TGGTTGTATA GACCCTTGTC TTGTGCTGTG AJ633337_L_sativa GTTCCCTT-C GGCGGACACA CGACTAGTGG TGGTTGAATA GACCCTCGTC TTTTGTTGCG AJ633336_L_saligna GTTCCCTT-T GGCGGACACA CGACTAGTGG TGGTTGAATA GACCCTCGTC TTTTGTTGTG AJ633434_T_barbata GTCCCCTT-C GGTGGACGCA CAACTAGTGG TGGTTGAATA GACCCTCGTC TTGTGTTGTG AJ633395_P_argyrocomum GTCCCCTT-C GGTGGACGCA CGACTAGTGG TGGTTGAATA GACCCTCGTC ATGTGTCGTG AJ633397_P_echioides GTCCCCTT-C GGTGGACGCA CGACTAGTGG TGGTTGAATA GACCCTCGTC ATGTGTCGTG AJ633384_A_integrifolia GTCCCCTT-C GGTGGACGCA CGACTAGTGG TGGTTGAAAA GACCCTCGTC CTGTGTCGTG AJ633444_A_minima GTCCCCTT-C GGTGGACGCA CAACTAGTGG TGGTTGAATA GACCCTCGTC TTGTGTTGTG ....|....| ....|....| ....|....| ....|....| ....|....| ....|....| 605 615 625 635 645 655 Notoseris_sp TGTCGTGAGC TATGAGGGAG GCCCTCATCA AA-GACCCCA CTGTATCGTC TCTT----GA Notoseris_psilolepis TGTCGTGASC TGTGAGGGWA ACCCTCATCA TAAGACCCCA TTGTATAGTC TCTT----GA Erythros_amabilis CGTCTTGAGC TGTGA-GGAA ACCCTTGTTG AA-GACCCCA ATGTGTCGTA TTAA----GA Erythros_somal CGTCTTGAGC TGTGCGGAGG ACCCTTGTTG AA-GACCCCA ACGTGTCGTG TTAA----GA AJ633488_S_angust CGTCGTTTGC GACAAGGAAA TCTCTCGTAT AA-GACCCCA ATGCATTATC CTAT----GG AJ633486_S_crisp TGCCGTGTGC TGCAAGGGAA CCTCTTTTAT AA-GACCCCA ATGCATCTTC CTAT----GA AF473649_S_cichoriacea CSTCGTAAGC TGTGAGGGAG ACCCTTGTTG AA-GACCCCA ACGTGTCGTC GTGC----GA AF473610_P_spinosus CGTCGTAAGC TGTGAGGGAG GCCCTTGTTG AA-GACCCCA ATGTGTCGTC TTGC----GA L13956___S_pauciflora CGTCGTAAGC TGTGAGGGAG GCCCTTGTTG AA-GACCCCA ATGTGT-GTC CTAC----GA AF473653_M_saxatilis TGTCGTAAGC CGTGAGGGAG GCCCTTGATG AA-GACCCCA ATGCGTCGTC TTGC----GA AJ633457_C_intybus CGTCATTTGC TGTGAGGGAG GCCCTTGATG AA-GACCCCA ATGTATCGTC TTGA----GA AJ633455_C_spinosum CGTCATGAGC TGTGAGGGAG GCCCTTGATG AA-GACCCCA ATGTGTCGTC TTGA----GA AJ633452_C_endivia YGTCGTGAGC TGTGAGGGAG GCCCTTGATG AA-GACCCCA ATGTGTCGTC TTGA----GA AJ581724_M_laciniata CGTCGTAAGC CGTAAGGGAG GCCTTTGA-- -A-GACCCCA AYGTGTCGTC TTGC----GA AF386493_A_grandiflora YGTCGTAAGC CGTGAGGGAG GACTTTGATG AA-GACCCCA ACGTGTCGTC CTGC----GA AH015020_T_heterophylla TGTCGTGAGC TGTGAAGGAA GTTCTCATTT CA-GACCCTA CTGTATCGTT AAAT----GA AH015014_S_wildpretii TGTCGTGAGC TGTGAAGGAA GTTCTCATTT CA-GACCCTA CTGTATCGTT AAAA----GA AF422137_S_kirkii TGTCGTGAGC TGTGAGGGAA ATTCTCAATT TA-GACCCCA CTGTATCGTT AAAA----AA EF107656_H_radicata TGTCATGAGC TGCTAGGGA- GCCCTCATCA AA-GACCCTT -TGTATCGTT TTCG----GA PPITS2B__Pre_purpur TGTTATGAGC TGCTAGGGAA GC-CTCATCA -A-GACCCCA TCGTATCGTT TTAG----GA AJ627266_H_leontodontoides TGTCATGAGC TGCTAGGGA- GCCCTCATCA AA-GACCCCA TCGTATCGTT TTCG----GA AJ633298_R_stellatus TGTTGTGAGC CGTTAGGGTA ACGCTTAACA AA-GACCCCA TTGTATCGTC TTTT----GA AJ633371_C_vesicaria TGTCATGAGC TGCTAGGGTA ACCCTCATTA AA-GACCCCA TTGTATCGTC TTCCTTAGGA AJ633294_Y_japonica TGTCGTTAGC CTCTAGGGAC ATACTGA--A AA-GACCCTA CTGTATTGTC TCTA----GA AJ633293_Y_denticulata TGTTTTGAGC CTTATGGGAA ATCCTCATCA AA-GACCCCA TCGTATCGTC TCTT----GA AJ633337_L_sativa TGTCGTGAGC TGTAAGGGTA GCCCTCATCA AA-GACCCCA TTGTATCGTC TTCG----GA AJ633336_L_saligna TGTCGTGAGC TGTAAGGGAA ACCCTCATCA AA-GACCCCA CTGTATCATC TTCG----GA AJ633434_T_barbata CGCCGTGAGC TGTGAGGGAG GCCCTTTACG AA-GACCCCA ATGTGTCGTC TTGC----GA AJ633395_P_argyrocomum CGTCTTGAGC TGTGAGGGAT GTGCTCGATT AA-GACCCCA ATGTGTCGTC TTGC----GA AJ633397_P_echioides TGTCTTGAGC TGTGAGGGAT GTGCTCGATA AA-GACCCCA GTGTGTCGTC TTGC----GA AJ633384_A_integrifolia CGTCATAAGC CGTGAGGGAT GCGCTCGAGA AA-GACCCCA ATGTGTCGTT TCAC----GA AJ633444_A_minima CGTCGTGAGC TGTGAGGGAG GCCCTTGATG AA-GACCCCA ATGTGTCGTC TTGC----GA ....|....| .. 665 Notoseris_sp CGATGCTTCG AC Notoseris_psilolepis CGATGCTTCG AC Erythros_amabilis CGATGCTTCG AC Erythros_somal CGACGCTTCG AC AJ633488_S_angust TGATGCTTCG AC AJ633486_S_crisp CGATGTTTCG AC AF473649_S_cichoriacea CGATGCTTCG A- AF473610_P_spinosus CGACGCTTCG A- L13956___S_pauciflora CGATGCTTGG AC AF473653_M_saxatilis CGACGCTTCG A- AJ633457_C_intybus CGATGCTTCG AC AJ633455_C_spinosum CGATGCTTCG AC AJ633452_C_endivia CGATGCTTCG AC AJ581724_M_laciniata CGATGCTTCG AC AF386493_A_grandiflora CGATGCTCCG AC AH015020_T_heterophylla CGATATATCG AC AH015014_S_wildpretii CGATATATCG AC AF422137_S_kirkii CGATATATCG AC EF107656_H_radicata CGGTGCTTCG AC PPITS2B__Pre_purpur CGGTGCTTCG AC AJ627266_H_leontodontoides CGGTGCTTCG AC AJ633298_R_stellatus CGGTACTTCG AC AJ633371_C_vesicaria CGATGCTTCG AC AJ633294_Y_japonica TGATACTTCG AC AJ633293_Y_denticulata CGATGCTTCG AA AJ633337_L_sativa TGATGCTTCG AC AJ633336_L_saligna TGATGCTTCG AC AJ633434_T_barbata CGATGCTTCG AC AJ633395_P_argyrocomum CGATGCTTCG AC AJ633397_P_echioides CGATGCTTCG AC AJ633384_A_integrifolia CGATGCTTCG AC AJ633444_A_minima CGATGCTTCG AC