Biodiversity Informatics

Natural Substances in the Compositae: The Bohlmann Files

Perspectives

The verification of the scientific plant names, the completion and correction of chemical data and the linking of synonyms (as far as completed) has established the basis for further work on improving data content after the project period ended. After the project's end the BGBM will provide the database as a service and incorporate corrections and additions as received from the scientific community. The BGBM's own research focus on this family and the variety of established professional contacts will guarantee the continued maintenance of the database.

Future options for which the BGBM will try to find the means are the following:

  • Comprehensive error detection within the database: For example, erroneous literature reports could be detected by cross-checking of the chemical structures and compounds associated with sets of synonyms. The occurrence of specific compounds can be checked against taxonomic subdivisions of the family to detect and investigate outliers.
  • Linking the database to other taxonomic information systems: This can serve to correlate the data with other factual data, so the Bohlmann database should be linked to the forthcoming family database under GBIF. This should also provide crosslinks to further sources of information on usage or bioactivity.
  • Enabling remote entering and editing of data via the WWW. Since this touches a number of data security aspects, the remote editing capabilities of the JChem software are presently disabled. Future development, however, could greatly profit from involving a number of experts in data maintenance and quality control by providing them with a suitable web editor.
  • Adding further data: further taxonomic and bibliographic information and data on the bioactivity or use of compounds or the plant itself can also be added directly to the Bohlmann database.
  • Finding materials for experimentation or exploitation: On-line taxonomic information systems such as Euro+Med Plantbase or IOPI (part of the Species 2000 initiative) could provide the geographical distribution of the species, pointing interested parties to possible sources of material. Taxonomic information systems can also reveal related species, which have not been analysed yet but which may be a better source of an interesting compound (e.g. if the originally investigated plant is protected, is unavailable for other reasons, or can't be easily cultivated). Ideally, linking to commercial services may provide a direct source for plant material. Likewise, linking to botanic garden information systems, such as SysTax, may point to a source of material for research purposes in pharmacy and botanical systematics.
  • Taxonomic research: the comparatively large amount of information made available allows for correlation of occurrences of substances in different subdivisions of the family. It thus provides a base for hypothesis on phylogenetical relationships which may be investigated or incorporated into ongoing research.
  • Informatics: the need for an open-source tool for storage and searching of chemical structures is evident. The BGBM will try to foster such a development.

[Bohlmann: Abstract | Introduction | Data Structure | Objectives | Results | Challenges and Solutions | Perspectives | Publications | People | Database

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© Botanic Garden and Botanical Museum Berlin-Dahlem, Freie Universität Berlin
Page editor, Date (this page): 08. January 2007
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